Dr Joshua Noreh, who supervised the births, hailed them as a landmark for Kenya, 28 years after the first test tube baby was born in the UK.
This happened when Louise Brown was born in Oldham in 1978, and she was the first of more than one million babies conceived through in vitro fertilisation (IVF) worldwide.
There have been Kenyan women who have undergone successful IVF treatment in the past, but they have always had to go to clinics in neighbouring countries such as Uganda or South Africa.
Both the new mothers paid in the region of 300,000 Kenyan shillings (£2,275) for the procedure.
In IVF treatment, an individual egg from the mother is fertilised in a laboratory with sperm from the father and the fertilised embryo is then implanted into the mother's womb where it is allowed to develop naturally.